PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g02843.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 275aa    MW: 30795.3 Da    PI: 9.6752
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g02843.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+  l+ ++ ++G+g W tI +          R+  ++k++w+++
  Peaxi162Scf00003g02843.1  5 KQKWTSEEEAALKAGIIKYGPGKWLTILKDPEfsgvlYQRSNIDLKDKWRNL 56
                              79***********************************99***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.158161IPR017930Myb domain
SuperFamilySSF466891.79E-14269IPR009057Homeodomain-like
SMARTSM007171.0E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-12456IPR009057Homeodomain-like
PfamPF002491.0E-5556IPR001005SANT/Myb domain
CDDcd116603.20E-17657No hitNo description
SMARTSM005262.1E-13118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.61E-16119195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.549120188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-13123189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.3E-8125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI IKYGPGKWLT ILKDPEFSGV LYQRSNIDLK DKWRNLTVMA  60
NGWGSREKKR MALKSMILAP QQDESPVAVT PIAVSDNEIA EVRPATSSSG YWQNGGSRRS  120
IRRLDNLIME AINNLKEPGG SNKTTIATYM EDEHWAPPNF KRLLSARLKY LTASGKLIKM  180
KRKYRMDPKL TFSNTRRNLS ISLMDNDQMI CCKVDPDDIN VLSRSQIDLQ LTTMSMSPQE  240
AAGEAEEAPE ADAEAVQAFS DAAVKRLEGR SIPRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598583.11e-122PREDICTED: telomere repeat-binding factor 1-like isoform X3
RefseqXP_009598578.11e-122PREDICTED: telomere repeat-binding factor 1-like isoform X3
RefseqXP_009598573.11e-122PREDICTED: telomere repeat-binding factor 1-like isoform X3
SwissprotQ8VWK45e-87TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E11e-120M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595421e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-88telomere repeat binding factor 1